Introduction to Genomics, Proteomics, and Bioinformatics (Fall, 2005)


Time: Tuesday, 6:00 - 7:30 PM, Starting date: August 30, 2005

Place: MSB-E609b, UMDNJ-New Jersey Medical School

Coordinators: Dr. Bin Tian and Dr. Scott Diehl

Syllabus:

Date

Instructor

Topic (Click to download lecture slides)

1

08/30/05

Dr. Donnelly 

DNA sequencing and the human genome project:  laboratory methods

Dr. Diehl  Introduction to genetic variation

2

09/06/05

Dr. Diehl

Genetic Variation: SNPs

3

09/13/05

Dr. Tian

Genome structure and function

4

09/20/05

Dr. Tian

Sequence comparisons

5 09/27/05 Dr. Diehl The haplotype map and human disease gene mapping

6

10/04/05

Dr. Diehl

Pharmacogenomics and individualized medicine

Exam I

7

10/11/05

Dr. Tian

EST, SAGE and related techniques

8

10/18/05

Dr. Tian

Gene prediction and comparative genomics

9

10/25/05

Dr. Soteropoulos 

& Dr. Aris 

DNA microarray and its analysis

10

11/01/05

Dr. Li

Overview of protein structure and function

Exam II

11

11/08/05

Dr. Li

Analytical technologies for proteomics

12

11/15/05

Dr. Li

Mass spectrometry and protein identification

13

11/22/05

Dr. Li

Analysis of proteomics data

14

11/29/05

Dr. Li

Proteomics applications and emerging technologies

15

12/06/05

Dr. Tian

Gene ontology, gene pathway, and gene network

Exam III

Grading:

Attendance: 10%

Three exams: 90% (30% each)

Instructors:  

Dr. Virginie M. Aris (arisvm@umdnj.edu), Center for Applied Genomics, Public Health Research Institute.

Dr. Scott Diehl (diehlsr@umdnj.edu), Center for Pharmacogenomics and Complex Disease Research, UMDNJ-New Jersey Dental School.

Dr. Bob Donnelly (donnelly@umdnj.edu), Molecular Resource Facility, UMDNJ-New Jersey Medical School.

Dr. Hong Li (liho2@umdnj.edu), Center for Advanced Proteomics Research, UMDNJ-New Jersey Medical School.

Dr. Patricia Soteropoulos (soteropoulos@phri.org), Center for Applied Genomics, Public Health Research Institute.

Dr. Bin Tian (btian@umdnj.edu), Department of Biochemistry and Molecular Biology, UMDNJ-New Jersey Medical School.

Students:

Murugabaskar Balan (balanmu@umdnj.edu)
Sarah Darmon (darmonsa@umdnj.edu)
Thomas Finocchio (tfinocchio@gmail.com)
Sangjin Han (hansa@umdnj.edu)
Richard Jimenez (jimeneri@umdnj.edu)
Mugdha Khaladkar (mk94@njit.edu)
Jiyeon Park (parkji@umdnj.edu)
Athanasios Peppas (peppasap@umdnj.edu)
Sean Senn (sennse@umdnj.edu)
Raghavendra Shamanna (shamanra@umdnj.edu)
Yan Zhong (zhongya@umdnj.edu)
Ijen Yeh (yehij@umdnj.edu)
Veera Dmello (dmellove@umdnj.edu)
Ju Youn Lee (lee21@umdnj.edu)
Dongrong Wen (dw39@oak.njit.edu)
Yiming Cheng (yc34@njit.edu)
Minjie Feng (minjie.feng@gmail.com)
Martin Chou (chouch@umdnj.edu)

Click here to send an email to all students.

Last updated on 12/07/05