Release 3.2 (Aug 2018)

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Genome Version
Species Gene annotation Version
MouseRefSeqRelease 83
EnsemblRelease 67
HumanRefSeqRelease 83
EnsemblRelease 75
FANTOM5Aug 09, 2017
RatRefSeqRelease 83
EnsemblRelease 79
ChickenRefSeqRelease 83
EnsemblRelease 85



Summary of PolyA_DB version 3.2

HumanMouseRatChicken
No. of samples used 107246119
No. of PAS reads used365,601,757761,795,07423,616,60029,104,491
No. of PASs 290,168384,33761,90565,909
No. of genes listed 28,95923,53814,29512,292
No. of genes with 3' end extension 15,82915,3048,6078,358
Median 3' end extension size(nt) 1,5299216491,075
No. of mRNA genes 17,47519,23214,12412,130
No. of ncRNA genes 11,4844,306171162


Sample list
SpeciesSampleNo. of replicatesNo. of PAS reads
Human A549 cells 1 1,904,382
Human U87 cells 4 11,605,312
Human HEK293 cells 7 17,520,283
Human HeLa cells 25 78,904,647
Human Embroyonic stem cells 7 20,992,021
Human Tissue mix 3 11,224,423
Human MCF7 cells 4 5,836,425
Human 293T cells 7 18,322,377
Human HTR8 cells 5 22,440,198
Human Neural stem cells 17 32,565,958
Human Cerebellum 4 28,862,575
Human JEG3 cells 5 20,985,499
Human LNCaP cells 6 18,700,102
Human MCF10A cells 1 8,133,793
Human MDA-MB-231 cells 1 10,349,391
Human MDA-MB-468 cells 1 6,670,321
Human Mammary epithelial cells 1 5,095,222
Human MeWo cells 6 21,647,307
Human SKBR3 cells 1 10,525,835
Human T474 cells 1 13,315,686
Mouse C57 brain 3 13,881,067
Mouse FVB brain 2 7,482,063
Mouse C57 heart 3 13,533,459
Mouse FVB heart 2 6,996,872
Mouse C57 testis 3 19,613,694
Mouse FVB testis 2 15,049,845
Mouse 3T3 L1 cells 27 76,914,757
Mouse C2C12 cells 50 151,835,526
Mouse Embryonic stem cells 7 7,693,131
Mouse NIH3T3 cells 81 271,767,998
Mouse Other brain 8 4,913,813
Mouse Other testis 21 41,301,953
Mouse Whole embryo 5 14,168,157
Mouse Tissue mix 1 4,210,918
Mouse Other heart 16 45,031,651
Mouse muscle 4 32,317,324
Mouse 4T1 cells 5 17,895,197
Mouse MH-S cells 3 11,997,437
Mouse Mouse stem cells 3 5,190,212
Rat Brain 2 3,901,979
Rat Heart 2 3,590,863
Rat Testis 2 6,413,264
Rat Tissue mix,adult 2 2,764,014
Rat Whole body neonatal 3 6,946,480


Please contact Ruijia Wang/Bin Tian for questions/comments/suggestions.