#=== Query ===# >NM_000032:1-52 Homo sapiens aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) (ALAS2), nuclear gene encoding mitochondrial protein, mRNA .(((((...((((((.(((((......)))))))).)))...)))))... 1 CACCTGTCATTCGTTCGTCCTCAGTGCAGGGCAACAGGACTTTAGGTTCA 50 .. 51 AG 52 #=== Hits ===# 1 68 1-52 NM_000032:1-52 1-52 Homo sapiens aminolevulinate, delta-, synthase 2 ( 2 21 10-39 NM_014585:151-250 52-81 Homo sapiens solute carrier family 40 (iron-regula 3 19 13-35 NM_003234:3444-3543 41-63 Homo sapiens transferrin receptor (p90, CD71) (TFR 4 17 13-35 NM_003234:3844-3943 44-66 Homo sapiens transferrin receptor (p90, CD71) (TFR 4 17 13-35 NM_003234:3944-4043 56-78 Homo sapiens transferrin receptor (p90, CD71) (TFR 6 16 14-34 NM_000146:1-100 20-40 Homo sapiens ferritin, light polypeptide (FTL), mR 7 13 13-35 NM_003234:3394-3493 41-63 Homo sapiens transferrin receptor (p90, CD71) (TFR =============================================================== Rank: 1 Score: 68 Query: 52 (ss:20,ds:32) Identity: str: 100%; seq:100% (ss:100%, ds:100%) Gap: 0 (ss:0, ds:0) Mismatch: 0 (ss:0, ds:0) .(((((...((((((.(((((......)))))))).)))...))) .(((((...((((((.(((((......)))))))).)))...))) NM_000032:1-52: 1 CACCTGTCATTCGTTCGTCCTCAGTGCAGGGCAACAGGACTTTAG 45 ||||||||||||||||||||||||||||||||||||||||||||| NM_000032:1-52: 1 CACCTGTCATTCGTTCGTCCTCAGTGCAGGGCAACAGGACTTTAG 45 ))..... ))..... NM_000032:1-52: 46 GTTCAAG 52 ||||||| NM_000032:1-52: 46 GTTCAAG 52 =============================================================== Rank: 2 Score: 21 Query: 30 (ss:8,ds:22) Identity: str: 100%; seq:40% (ss:75%, ds:27%) Gap: 0 (ss:0, ds:0) Mismatch: 18 (ss:2, ds:16) ((((((.(((((......)))))))).))) ((((((.(((((......)))))))).))) NM_000032:1-52: 10 TTCGTTCGTCCTCAGTGCAGGGCAACAGGA 39 ::::|||::|::||||| ::|::||: ::: NM_014585:151-250: 52 CAACTTCAGCTACAGTGTTAGCTAAGTTTG 81 =============================================================== Rank: 3 Score: 19 Query: 23 (ss:7,ds:16) Identity: str: 100%; seq:47% (ss:100%, ds:25%) Gap: 0 (ss:0, ds:0) Mismatch: 12 (ss:0, ds:12) (((.(((((......)))))))) (((.(((((......)))))))) NM_000032:1-52: 13 GTTCGTCCTCAGTGCAGGGCAAC 35 ::|||::::||||||::::||:: NM_003234:3444-3543: 41 TATCGGAAGCAGTGCCTTCCATA 63 =============================================================== Rank: 4 Score: 17 Query: 23 (ss:7,ds:16) Identity: str: 100%; seq:43% (ss:85%, ds:25%) Gap: 0 (ss:0, ds:0) Mismatch: 13 (ss:1, ds:12) (((.(((((......)))))))) (((.(((((......)))))))) NM_000032:1-52: 13 GTTCGTCCTCAGTGCAGGGCAAC 35 ::|||::::||||| ::::||:: NM_003234:3844-3943: 44 TATCGGGAGCAGTGTCTTCCATA 66 =============================================================== Rank: 4 Score: 17 Query: 23 (ss:7,ds:16) Identity: str: 100%; seq:43% (ss:85%, ds:25%) Gap: 0 (ss:0, ds:0) Mismatch: 13 (ss:1, ds:12) (((.(((((......)))))))) (((.(((((......)))))))) NM_000032:1-52: 13 GTTCGTCCTCAGTGCAGGGCAAC 35 ::|||::::||||| ::::||:: NM_003234:3944-4043: 56 TATCGGGAACAGTGTTTCCCATA 78 =============================================================== Rank: 6 Score: 16 Query: 21 (ss:7,ds:14) Identity: str: 100%; seq:47% (ss:85%, ds:28%) Gap: 0 (ss:0, ds:0) Mismatch: 11 (ss:1, ds:10) ((.(((((......))))))) ((.(((((......))))))) NM_000032:1-52: 14 TTCGTCCTCAGTGCAGGGCAA 34 ::|:||::||||| ::||::: NM_000146:1-100: 20 TGCTTCAACAGTGTTTGGACG 40 =============================================================== Rank: 7 Score: 13 Query: 23 (ss:7,ds:16) Identity: str: 100%; seq:30% (ss:71%, ds:12%) Gap: 0 (ss:0, ds:0) Mismatch: 16 (ss:2, ds:14) (((.(((((......)))))))) (((.(((((......)))))))) NM_000032:1-52: 13 GTTCGTCCTCAGTGCAGGGCAAC 35 ::||:::::||| | :::::|:: NM_003234:3394-3493: 41 TATCAGTGACAGAGTTCACTATA 63 The score distribution is: Max: 68 Min: 13 score distribution: one '=' equals 1 < 14.0 |= [1] 14.0<-->15.0 | 15.0<-->16.0 |= [1] 16.0<-->17.0 |== [2] 17.0<-->18.0 | 18.0<-->19.0 |= [1] 19.0<-->20.0 | 20.0<-->21.0 |= [1] 21.0<-->22.0 | 22.0<-->23.0 | 23.0<-->24.0 | 24.0<-->25.0 | 25.0<-->26.0 | 26.0<-->27.0 | 27.0<-->28.0 | 28.0<-->29.0 | 29.0<-->30.0 | 30.0<-->31.0 | 31.0<-->32.0 | 32.0<-->33.0 | 33.0<-->34.0 | 34.0<-->35.0 | 35.0<-->36.0 | 36.0<-->37.0 | 37.0<-->38.0 | 38.0<-->39.0 | 39.0<-->40.0 | 40.0<-->41.0 | 41.0<-->42.0 | 42.0<-->43.0 | 43.0<-->44.0 | 44.0<-->45.0 | 45.0<-->46.0 | 46.0<-->47.0 | 47.0<-->48.0 | 48.0<-->49.0 | 49.0<-->50.0 | 50.0<-->51.0 | 51.0<-->52.0 | 52.0<-->53.0 | 53.0<-->54.0 | 54.0<-->55.0 | 55.0<-->56.0 | 56.0<-->57.0 | 57.0<-->58.0 | 58.0<-->59.0 | 59.0<-->60.0 | 60.0<-->61.0 | 61.0<-->62.0 | 62.0<-->63.0 | 63.0<-->64.0 | 64.0<-->65.0 | 65.0<-->66.0 | 66.0<-->67.0 | >67 |= [1] The score matrices used are : A C G U A 1 -1 -1 -1 C -1 1 -1 -1 G -1 -1 1 -1 U -1 -1 -1 1 AU CG GC GU UA UG AU 3 1 1 1 1 1 CG 1 3 1 1 1 1 GC 1 1 3 1 1 1 GU 1 1 1 3 1 1 UA 1 1 1 1 3 1 UG 1 1 1 1 1 3 Gap penalty is set as: -6.0